JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FPR3_chr19_51790157_51831190	0/0	t0028	1566	1	0	1	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FRA10AC1_chr10_93662883_93707592	0/1	t0001	2159	104	5	25	53	7	13	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0002	2162	66	23	4	33	0	6	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0003	2156	54	4	3	45	2	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	1/0	t0004	2162	44	0	18	17	2	6	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0005	2162	19	18	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0006	2165	10	0	0	10	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0007	2185	7	3	1	0	0	3	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0008	2165	5	5	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0009	2168	4	0	0	3	0	1	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0010	2171	4	3	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0011	2186	3	0	3	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0012	2174	3	3	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0013	2174	3	0	3	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0014	2171	3	3	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0015	2162	3	3	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0016	2192	2	0	0	0	2	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0017	2183	2	0	0	2	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0018	2183	2	2	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0019	2171	2	2	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0020	2165	2	2	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0021	2159	2	1	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0022	4493	1	0	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0023	2237	1	0	0	0	0	1	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0024	2201	1	0	0	1	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0025	2189	1	0	0	0	1	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0026	2186	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0027	2186	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0028	2177	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0029	2180	1	0	0	0	0	1	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0030	2174	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0031	2168	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0032	2165	1	0	0	1	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0033	2162	1	0	0	0	0	1	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0034	2162	1	0	0	1	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0035	2162	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0036	2165	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0037	2156	1	0	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0038	2156	1	0	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0039	2156	1	0	1	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0040	2156	1	0	0	1	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	t0041	2156	1	0	0	1	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRAS1_chr4_78052323_78549269	0/0	t0001	3837	27	4	2	13	1	7	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0002	3833	22	1	1	12	2	6	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0003	3838	13	1	0	11	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0004	3833	10	8	1	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0005	3837	9	1	5	0	1	2	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	1/0	t0006	3833	9	4	0	2	0	2	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0007	3837	7	3	0	3	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	t0008	3837	6	6	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269