JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRAT1_chr10_97314271_97326915	0/1	t0004	1805	58	6	23	13	5	10	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0005	1806	14	6	1	6	0	1	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0006	1806	7	0	7	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0007	1805	6	0	4	2	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0008	1805	6	0	0	6	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0009	1806	4	0	0	4	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0010	1805	3	3	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0011	1806	3	3	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0012	1806	1	0	0	1	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0013	1805	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0014	1805	1	0	0	0	1	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0015	1805	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0016	1805	1	0	0	0	0	1	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0017	1805	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0018	1806	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0019	1806	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	t0020	1790	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT2_chr10_97327497_97339729	0/0	t0001	1532	231	32	45	119	9	26	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/1	t0002	1532	157	29	31	72	7	17	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	1/0	t0003	1532	32	29	1	0	0	1	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0004	1532	12	5	7	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0005	1532	6	0	0	6	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0006	1532	2	0	0	0	0	2	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0007	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0008	1532	1	0	1	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0009	1532	1	0	1	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0010	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0011	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0012	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0013	1519	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0014	1532	1	1	0	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0015	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	t0016	1532	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FREM1_chr9_14732152_14915428	1/1	t0001	1027	198	37	58	63	8	30	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0002	1027	97	15	13	65	0	4	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0003	1027	15	15	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0004	1027	13	11	1	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0005	1027	10	10	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0006	1027	3	3	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0007	1027	3	3	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0008	1027	2	2	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0009	1027	2	0	0	2	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0010	1027	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0011	1027	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	t0012	1027	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM2_chr13_38682077_38892131	0/0	t0001	6612	56	0	12	36	3	5	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	1/0	t0002	6613	35	6	8	9	1	10	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	t0003	6612	33	26	4	1	0	2	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	t0004	6614	27	2	2	20	0	3	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	t0005	6609	13	0	0	13	0	0	copy fasta	FREM2	chr13	38682077	38892131