JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FREM2_chr13_38682077_38892131	0/0	t0056	6612	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM3_chr4_143572302_143705675	1/1	t0001	310	255	67	56	86	16	28	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	t0002	310	2	0	0	0	0	2	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	t0003	310	2	2	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	t0004	310	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREY1_chr11_45901534_45912271	1/1	t0001	62	375	92	78	141	16	46	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	t0002	62	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FRG1_chr4_189935872_189968192	0/1	t0001	202	154	21	34	65	8	25	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0002	202	69	21	14	18	5	11	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0003	202	39	13	1	25	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0004	202	36	2	2	30	1	1	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0005	202	31	24	4	0	0	3	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0006	202	5	5	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0007	202	5	4	1	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0008	202	2	0	0	2	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0009	202	2	2	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0010	202	1	0	0	0	0	1	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0011	202	1	1	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0012	202	1	0	0	0	0	1	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	t0013	202	1	1	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG2B_chr10_133618895_133631795	0/0	t0001	1260	164	56	36	62	5	5	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/1	t0002	1258	138	20	29	54	10	24	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0003	1258	83	6	12	50	3	12	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0004	1258	16	0	0	15	0	1	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0005	1260	7	5	2	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0006	1261	3	1	0	2	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0007	1259	3	0	0	2	0	1	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0008	1258	2	0	1	0	0	1	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0009	1258	2	2	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0010	1260	1	1	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0011	1259	1	0	0	1	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	t0012	1260	1	1	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2C_chr3_75659328_75672173	1/1	t0001	1185	227	49	41	105	5	25	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0002	1186	73	0	16	37	9	11	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0003	1186	66	20	15	20	3	8	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0004	1185	18	18	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0005	1185	9	0	8	0	0	1	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0006	1183	3	3	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0007	1185	3	0	0	3	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0008	1186	2	0	0	1	1	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0009	1185	2	0	0	2	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0010	1186	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0011	1186	1	0	0	1	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0012	1186	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0013	1186	1	0	0	0	0	1	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0014	1186	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0015	1186	1	0	0	1	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	t0016	1185	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2_chr4_190019367_190032256	0/0	t0001	1244	194	23	44	95	6	26	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0002	1247	116	35	24	38	4	15	copy fasta	FRG2	chr4	190019367	190032256