JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRG2_chr4_190019367_190032256	0/0	t0003	1245	57	16	2	36	0	3	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0004	1245	8	7	0	0	0	1	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0005	1244	8	7	1	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0006	1245	4	0	0	3	0	1	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0007	1245	3	0	0	3	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0008	1247	3	3	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0009	1247	2	0	0	0	2	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0010	1244	1	1	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0011	1244	1	1	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0012	1244	1	1	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0013	1244	1	0	1	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	t0014	1244	1	0	0	1	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRK_chr6_115926149_116065891	0/0	t0001	11842	56	21	11	12	5	7	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0002	11842	42	1	6	24	4	7	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0003	11843	14	2	10	0	1	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0004	11843	13	0	0	13	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0005	11845	12	0	2	10	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0006	11843	12	4	1	7	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0007	11842	10	10	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0008	11845	10	0	5	1	2	2	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0009	11843	5	0	0	5	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0010	11842	5	5	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0011	11842	5	1	3	0	1	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0012	11839	4	4	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0013	11843	4	0	2	0	0	2	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0014	11841	4	1	2	0	0	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0015	11843	4	2	1	0	1	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0016	11843	3	2	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0017	11845	3	3	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/1	t0018	11842	3	1	0	0	0	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0019	11841	3	0	0	3	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0020	11842	3	0	0	3	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0021	11843	3	0	1	0	2	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0022	11842	2	2	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0023	11842	2	0	0	2	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0024	11842	2	1	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0025	11843	2	2	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0026	11842	2	0	1	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0027	11842	2	0	0	0	0	2	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0028	11843	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0029	11843	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0030	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0031	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	1/0	t0032	11846	1	0	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0033	11843	1	0	0	0	0	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0034	11845	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0035	11841	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0036	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0037	11842	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0038	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891