JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRK_chr6_115926149_116065891	0/0	t0039	11842	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0040	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0041	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0042	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0043	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0044	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0045	11842	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0046	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0047	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0048	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0049	11842	1	0	0	0	0	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0050	11843	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0051	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0052	11823	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0053	11842	1	0	0	0	0	1	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0054	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0055	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0056	11842	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0057	11845	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0058	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0059	11843	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0060	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0061	11841	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0062	11841	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0063	11843	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0064	11843	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0065	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0066	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0067	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0068	11842	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0069	11843	1	0	1	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0070	11843	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	t0071	11845	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRMD1_chr6_168048095_168084212	0/0	t0001	4134	107	7	25	52	4	19	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0002	4137	62	34	12	3	4	9	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0003	4121	36	3	9	24	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0004	4137	28	2	4	22	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0005	4137	24	0	1	20	1	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0006	4134	20	2	6	8	1	3	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	1/1	t0007	4121	11	1	4	2	0	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0008	4134	11	0	5	4	1	1	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0009	4134	9	8	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0010	4137	7	0	1	3	3	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0011	4134	5	0	0	5	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0012	4121	5	4	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0013	4137	4	2	0	2	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0014	4134	4	4	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0015	4137	2	1	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0016	4121	2	1	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0017	4137	2	0	0	2	0	0	copy fasta	FRMD1	chr6	168048095	168084212