JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMD1_chr6_168048095_168084212	0/0	t0068	4137	1	0	0	0	1	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0069	4121	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0070	4134	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0071	4134	1	0	0	0	0	1	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	t0072	4121	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD3_chr9_83239622_83543401	0/0	t0001	3472	28	7	9	7	0	5	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/1	t0002	3467	20	9	2	6	2	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0003	3475	16	1	4	5	2	4	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0004	3476	16	1	0	14	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0005	3470	13	0	1	11	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	1/0	t0006	3467	12	5	5	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0007	3475	12	0	4	5	1	2	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0008	3472	10	4	1	2	1	2	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0009	3470	9	1	0	6	0	2	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0010	3476	8	1	0	3	0	4	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0011	3470	5	4	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0012	3470	5	4	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0013	3466	4	2	2	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0014	3472	4	0	0	4	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0015	3476	4	4	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0016	3473	3	0	3	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0017	3472	3	0	0	3	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0018	3465	3	3	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0019	3470	3	3	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0020	3466	2	0	2	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0021	3468	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0022	3472	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0023	3469	2	0	0	2	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0024	3466	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0025	3473	2	0	2	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0026	3463	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0027	3470	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0028	3473	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0029	3477	2	0	0	2	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0030	3471	2	2	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0031	3476	2	0	0	2	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0032	3489	2	0	0	2	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0033	3470	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0034	3467	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0035	3476	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0036	3467	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0037	3466	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0038	3473	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0039	3464	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0040	3468	1	0	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0041	3468	1	0	0	0	1	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0042	3465	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0043	3472	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0044	3467	1	0	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0045	3469	1	0	0	0	0	1	copy fasta	FRMD3	chr9	83239622	83543401