JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMD3_chr9_83239622_83543401	0/0	t0046	3475	1	0	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0047	3475	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0048	3479	1	0	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0049	3469	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0050	3471	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0051	3476	1	0	0	0	1	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0052	3472	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0053	3470	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0054	3476	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0055	3470	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0056	3466	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0057	3464	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0058	3469	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0059	3467	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0060	3468	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0061	3474	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0062	3467	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0063	3467	1	0	0	0	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0064	3471	1	0	1	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0065	3475	1	0	0	0	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0066	3475	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0067	3479	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0068	3472	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0069	3476	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	t0070	3484	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD4A_chr10_13638706_14335924	0/0	t0001	3743	28	11	4	8	1	4	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0002	3743	27	10	13	0	1	3	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0003	3743	12	8	0	4	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0004	3743	11	5	3	2	0	1	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0005	3743	8	5	3	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0006	3743	6	2	1	2	0	1	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0007	3743	6	0	3	3	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0008	3743	5	0	3	0	2	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0009	3743	4	4	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0010	3743	4	4	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0011	3743	3	0	2	1	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0012	3743	2	2	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0013	3743	2	2	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0014	3743	1	0	0	0	0	1	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0015	3743	1	0	1	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0016	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0017	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0018	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0019	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0020	3743	1	0	1	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0021	3743	1	0	0	0	1	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0022	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0023	3743	1	0	1	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0024	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0025	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924