JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMD4A_chr10_13638706_14335924	0/0	t0026	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0027	3743	1	0	0	0	1	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0028	3743	1	0	1	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	t0029	3743	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4B_chr3_69163782_69391088	0/0	t0001	3179	49	3	9	25	2	10	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0002	3175	45	10	12	13	4	6	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0003	3171	14	0	0	10	0	4	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	1/0	t0004	3179	9	7	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0005	3185	8	5	0	3	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0006	3171	6	6	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0007	3185	6	5	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0008	3179	6	0	0	5	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0009	3173	5	5	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0010	3175	5	1	2	0	1	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0011	3184	4	0	3	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0012	3179	4	4	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0013	3176	4	1	0	0	1	2	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0014	3175	4	4	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0015	3175	3	0	0	3	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0016	3182	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0017	3185	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0018	3181	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0019	3171	2	0	0	0	0	2	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0020	3179	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0021	3179	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0022	3175	2	0	0	0	2	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0023	3180	2	0	1	0	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0024	3179	2	0	0	0	0	2	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/1	t0025	3179	2	0	0	0	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0026	3179	2	0	2	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0027	3184	2	2	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0028	3184	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0029	3175	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0030	3180	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0031	3180	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0032	3184	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0033	3184	1	0	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0034	3185	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0035	3175	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0036	3171	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0037	3179	1	0	0	0	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0038	3171	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0039	3171	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0040	3180	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0041	3179	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0042	3175	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0043	3179	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0044	3179	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0045	3179	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0046	3179	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088