JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMD4B_chr3_69163782_69391088	0/0	t0047	3179	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0048	3175	1	0	0	0	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0049	3179	1	0	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0050	3178	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0051	3172	1	0	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0052	3179	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0053	3185	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0054	3179	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	t0055	3184	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD5_chr15_43865764_44200271	0/0	t0001	3339	72	38	14	13	1	6	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0002	3343	27	17	2	8	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0003	3348	18	2	6	7	1	2	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0004	3341	4	3	1	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0005	3338	4	4	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0006	3338	3	2	1	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0007	3343	2	2	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0008	3339	2	0	0	0	0	2	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0009	3339	1	0	0	1	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0010	3338	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0011	3343	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0012	3339	1	0	0	1	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0013	3339	1	0	0	1	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0014	3339	1	0	0	1	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0015	3339	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0016	3339	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0017	3339	1	0	0	0	0	1	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0018	3343	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0019	3339	1	0	0	0	0	1	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0020	3338	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0021	3343	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	t0022	3338	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD6_chr14_51646910_51735727	1/1	t0001	2932	234	47	43	110	9	23	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0002	2933	110	21	15	60	6	8	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0003	2932	9	8	1	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0004	2932	5	0	4	0	1	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0005	2932	4	0	0	4	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0006	2933	3	2	1	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0007	2933	3	0	3	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0008	2932	3	0	0	3	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0009	2932	2	2	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0010	2933	2	0	0	2	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0011	2933	2	2	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0012	2932	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0013	2932	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0014	2932	1	0	0	0	0	1	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0015	2932	1	0	1	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0016	2932	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0017	2932	1	0	1	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0018	2933	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0019	2933	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727