JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMD6_chr14_51646910_51735727	0/0	t0020	2933	1	0	0	1	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0021	2933	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0022	2932	1	0	1	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0023	2933	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	t0024	2933	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD7_chrX_132071990_132133020	1/1	t0001	1059	146	26	25	75	5	13	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	t0002	1059	37	19	4	12	0	2	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	t0003	1059	16	6	1	0	4	5	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	t0004	1059	8	8	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	t0005	1059	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	t0006	1059	1	1	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD8_chr11_65381637_65418525	0/1	t0001	2292	260	49	26	141	8	35	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0002	2292	36	6	15	9	1	5	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0003	2292	12	11	1	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	1/0	t0004	2291	11	8	2	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0005	2292	7	1	5	0	1	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0006	2292	6	0	5	0	1	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0007	2292	4	0	2	2	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0008	2292	3	3	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0009	2292	3	2	1	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0010	2291	3	3	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0011	2292	3	3	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0012	2292	3	0	0	3	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0013	2292	2	2	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0014	2292	2	0	0	2	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0015	2292	2	0	1	0	1	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0016	2292	2	0	0	0	0	2	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0017	2292	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0018	2292	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0019	2292	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0020	2292	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0021	2292	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0022	2292	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	t0023	2292	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMPD1_chr9_37645954_37751904	1/1	t0001	281	327	78	55	150	8	34	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	t0002	281	5	4	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	t0003	281	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD2_chr10_48151562_48279696	0/1	t0001	890	136	48	33	33	8	13	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	1/0	t0002	890	106	31	20	29	4	21	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	t0003	890	3	0	0	3	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	t0004	890	2	1	0	1	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	t0005	890	1	0	0	1	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	t0006	890	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	t0007	890	1	0	0	1	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD3_chrX_107444652_107610251	1/0	t0001	2240	98	19	11	54	2	11	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0002	2240	43	41	2	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0003	2240	8	0	2	3	1	2	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0004	2240	5	0	2	2	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0005	2241	3	0	0	3	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0006	2239	2	2	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251