JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRMPD3_chrX_107444652_107610251	0/0	t0007	2241	2	0	1	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0008	2240	2	0	0	0	1	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0009	2226	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0010	2229	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0011	2252	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0012	2243	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0013	2240	1	0	0	0	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0014	2240	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0015	2241	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0016	2240	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0017	2241	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0018	2242	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0019	2240	1	0	0	0	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0020	2241	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0021	2240	1	0	0	0	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/1	t0022	2240	1	0	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0023	2240	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0024	2242	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0025	2240	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0026	2241	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0027	2240	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	t0028	2240	1	0	0	0	1	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD4_chrX_12133473_12729523	0/0	t0001	3165	96	30	17	44	2	3	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0002	3165	49	11	10	14	2	12	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0003	3165	11	2	5	1	1	2	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0004	3165	3	3	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0005	3165	3	1	1	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0006	3165	3	1	2	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0007	3165	2	2	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0008	3165	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0009	3166	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0010	3165	1	0	1	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0011	3165	1	0	0	0	0	1	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0012	3165	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0013	3165	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	t0014	3165	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRRS1L_chr9_109125293_109172249	0/0	t0001	7274	68	0	21	38	4	5	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0002	7285	50	1	10	30	4	5	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0003	7274	42	4	7	18	1	12	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0004	7274	32	2	5	23	0	2	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/1	t0005	7274	20	1	4	13	0	1	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0006	7295	20	0	2	17	0	1	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0007	7274	18	0	5	12	0	1	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0008	7285	16	8	0	0	2	6	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0009	7274	12	10	1	0	0	1	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0010	7274	10	8	2	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0011	7274	10	9	1	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0012	7290	9	0	0	9	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0013	7285	7	7	0	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	t0014	7285	7	0	2	0	1	4	copy fasta	FRRS1L	chr9	109125293	109172249