Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCF2_chr7_151206484_151232205	0/0	t0024	2656	2	2	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	1/0	t0025	2656	2	0	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0026	2656	2	2	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0027	2656	2	0	0	2	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0028	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0029	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0030	2656	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0031	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0032	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0033	2656	1	0	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0034	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0035	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0036	2656	1	0	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0037	2656	1	0	0	0	1	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0038	2656	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0039	2656	1	0	0	0	1	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0040	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0041	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0042	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0043	2656	1	0	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0044	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0045	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0046	2656	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0047	2656	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0048	2656	1	0	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0049	2656	1	0	0	1	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0050	2656	1	1	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	1/1	t0001	317	392	73	73	184	14	46	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	t0002	317	15	15	0	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	t0003	317	6	4	2	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	t0004	317	2	2	0	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	t0005	317	1	0	1	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	1/0	t0001	976	81	18	13	40	5	4	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/1	t0002	977	78	16	18	29	6	8	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0003	978	56	7	13	22	3	11	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0004	976	35	29	6	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0005	971	21	0	4	14	1	2	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0006	970	19	2	1	12	0	4	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0007	972	11	1	1	6	0	3	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0008	976	7	2	3	0	1	1	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0009	977	6	5	0	0	0	1	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0010	979	6	0	4	0	2	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0011	970	5	0	5	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0012	983	4	1	1	0	0	2	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0013	978	3	0	0	0	0	3	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0014	970	2	2	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0015	973	2	2	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0016	973	2	2	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0017	984	2	1	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0018	970	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244