Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKT2_chr19_40225317_40290345	0/0	t0031	3783	1	0	0	0	0	1	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0032	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0033	3804	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0034	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0035	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0036	3805	1	0	1	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0037	3805	1	0	1	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0038	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0039	3805	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0040	3805	1	0	1	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0041	3806	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT3_chr1_243494724_243855243	0/0	t0001	5842	143	21	30	62	5	25	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0002	5839	30	4	8	12	0	6	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0003	5836	20	11	5	3	1	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/1	t0004	5843	12	1	4	2	0	4	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0005	5830	11	10	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0006	5839	9	0	0	9	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0007	5842	8	3	4	0	1	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0008	5839	5	0	0	5	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0009	5842	4	0	0	4	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0010	5839	4	0	0	4	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0011	5844	4	0	0	4	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0012	5837	3	1	1	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0013	5840	2	0	0	2	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0014	5842	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0015	5837	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0016	5842	2	0	2	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0017	5839	2	0	0	0	2	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0018	5836	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0019	5842	2	0	2	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0020	5831	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0021	5830	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0022	5842	2	2	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0023	5842	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0024	5840	1	0	0	0	0	1	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0025	5840	1	0	0	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0026	5836	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0027	5838	1	0	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0028	5835	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0029	5837	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0030	5835	1	0	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0031	5839	1	0	0	0	0	1	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0032	5845	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0033	5842	1	0	0	0	0	1	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0034	5838	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0035	5842	1	0	0	0	0	1	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0036	5842	1	0	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0037	5842	1	0	0	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0038	5842	1	0	0	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0039	5842	1	0	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243