JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRRS1_chr1_99698970_99771635	0/0	t0046	5184	2	0	1	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0047	5193	2	0	1	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0048	5193	2	0	0	1	1	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0049	5196	2	2	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0050	5193	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0051	5195	2	1	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0052	5191	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0053	5195	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0054	5193	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0055	5188	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0056	5191	2	0	0	1	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0057	5190	2	0	0	2	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0058	5189	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0059	5191	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0060	5194	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0061	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0062	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0063	5192	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0064	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0065	5189	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0066	5189	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0067	5192	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0068	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0069	5189	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0070	5195	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0071	5186	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0072	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0073	5208	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0074	5213	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0075	5206	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0076	5204	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0077	5206	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0078	5207	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0079	5208	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0080	5213	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0081	5206	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0082	5192	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0083	5193	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0084	5193	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0085	5207	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0086	5190	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0087	5195	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0088	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0089	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0090	5194	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0091	5194	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0092	5192	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0093	5193	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0094	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0095	5194	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635