JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRRS1_chr1_99698970_99771635	0/0	t0096	5206	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0097	5190	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0098	5192	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0099	5182	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0100	5183	1	0	0	0	1	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0101	5193	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0102	5189	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0103	5189	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0104	5194	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0105	5190	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0106	5193	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0107	5183	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0108	5184	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0109	5185	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0110	5188	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0111	5188	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0112	5190	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0113	5174	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0114	5182	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0115	5183	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0116	5183	1	0	0	0	1	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0117	5183	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0118	5185	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0119	5185	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0120	5174	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0121	5177	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0122	5178	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0123	5182	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0124	5185	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0125	5182	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0126	5183	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0127	5185	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0128	5184	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0129	5167	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0130	5188	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0131	5183	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0132	5209	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0133	5195	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0134	5196	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0135	5194	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0136	5194	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0137	5196	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0138	5196	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	1/0	t0139	5193	1	0	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0140	5194	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0141	5194	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0142	5195	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0143	5195	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0144	5198	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0145	5195	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635