JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRRS1_chr1_99698970_99771635	0/0	t0146	5190	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0147	5195	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0148	5188	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0149	5189	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0150	5190	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0151	5191	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0152	5192	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0153	5192	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0154	5194	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0155	5195	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0156	5190	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0157	5194	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0158	5188	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0159	5189	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0160	5190	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0161	5192	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0162	5183	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0163	5193	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0164	5182	1	0	1	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0165	5184	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	t0166	5184	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRS2_chr12_69465388_69584793	0/0	t0001	5241	85	25	11	37	3	9	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0002	5242	73	5	3	63	0	2	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0003	5242	66	11	15	30	1	9	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	1/0	t0004	5242	24	0	4	15	3	1	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0005	5243	13	12	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0006	5242	13	0	8	0	2	3	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0007	5241	8	7	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0008	5242	6	6	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0009	5241	6	6	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0010	5242	4	2	1	0	1	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0011	5241	4	4	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0012	5241	3	1	2	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0013	5241	3	0	0	3	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0014	5242	3	2	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/1	t0015	5242	3	1	0	0	0	1	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0016	5242	3	0	0	3	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0017	5242	2	2	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0018	5241	2	0	1	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0019	5241	2	0	2	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0020	5242	2	2	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0021	5241	1	0	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0022	5242	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0023	5242	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0024	5241	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0025	5243	1	0	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0026	5242	1	0	0	0	1	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0027	5242	1	0	0	0	0	1	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0028	5242	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0029	5243	1	0	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793