JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRS2_chr12_69465388_69584793	0/0	t0030	5242	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0031	5243	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0032	5242	1	0	1	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0033	5243	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0034	5242	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0035	5242	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0036	5242	1	0	0	0	1	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	t0037	5241	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS3_chr6_41765176_41784900	1/0	t0001	696	375	67	68	190	11	38	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/1	t0002	696	49	2	15	18	5	8	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	t0003	696	22	22	0	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	t0004	696	5	5	0	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	t0005	696	3	2	1	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	t0006	696	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	t0007	696	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRYL_chr4_48492357_48785279	1/1	t0001	2651	220	54	48	88	13	15	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0002	2651	29	0	0	29	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0003	2650	20	4	3	7	2	4	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0004	2651	2	2	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0005	2651	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0006	2651	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0007	2651	1	0	0	0	0	1	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0008	2651	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0009	2651	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0010	2651	1	0	0	0	1	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0011	2650	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0012	2651	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0013	2650	1	0	1	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0014	2651	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	t0015	2651	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRY_chr13_32026774_32304125	0/0	t0001	3688	67	12	11	34	5	5	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0002	3689	43	5	10	16	6	6	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0003	3689	26	14	3	5	2	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0004	3689	24	3	8	8	0	5	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0005	3689	20	7	6	2	1	4	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	1/0	t0006	3688	16	14	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0007	3689	8	7	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0008	3688	6	6	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0009	3689	3	0	2	0	1	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0010	3689	3	3	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0011	3688	3	1	1	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0012	3689	2	0	1	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0013	3688	2	0	0	2	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0014	3689	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0015	3689	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0016	3689	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0017	3689	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0018	3689	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0019	3689	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0020	3689	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125