JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FRY_chr13_32026774_32304125	0/0	t0021	3689	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/1	t0022	3689	1	0	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0023	3688	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0024	3688	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	t0025	3688	1	0	0	0	1	0	copy fasta	FRY	chr13	32026774	32304125
FRZB_chr2_182828275_182871637	1/1	t0001	1660	229	43	21	137	4	22	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0002	1660	80	8	35	21	5	11	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0003	1659	35	26	5	1	3	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0004	1660	8	8	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0005	1659	4	1	0	3	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0006	1659	4	0	1	0	0	3	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0007	1660	3	2	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0008	1660	2	2	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0009	1660	2	2	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0010	1660	2	0	2	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	t0011	1660	1	0	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FSBP_chr8_94422716_94441944	1/0	t0001	4492	124	33	29	41	3	17	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/1	t0002	4490	106	2	22	68	4	9	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0003	4492	76	20	4	47	0	5	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0004	4490	45	18	10	16	0	1	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0005	4492	18	0	0	18	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0006	4492	9	1	3	0	2	3	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0007	4489	9	0	3	0	4	2	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0008	4490	5	4	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0009	4490	4	3	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0010	4491	3	2	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0011	4492	2	0	0	2	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0012	4490	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0013	4492	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0014	4490	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0015	4490	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0016	4492	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0017	4491	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0018	4491	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0019	4492	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0020	4492	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0021	4489	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0022	4492	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0023	4492	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0024	4492	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0025	4492	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0026	4492	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0027	4490	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0028	4490	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0029	4490	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0030	4490	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0031	4490	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0032	4490	1	0	0	0	1	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0033	4490	1	0	0	0	0	1	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0034	4490	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944