JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FSBP_chr8_94422716_94441944	0/0	t0035	4490	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0036	4491	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0037	4492	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	t0038	4491	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSCB_chr14_44499149_44512283	1/1	t0001	658	245	43	44	126	6	24	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0002	658	154	30	25	73	6	20	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0003	658	11	0	2	0	3	6	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0004	658	10	9	0	0	1	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0005	658	9	9	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0006	657	4	0	0	4	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0007	658	3	2	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0008	658	3	3	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0009	658	3	0	0	3	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0010	658	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0011	658	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0012	658	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	t0013	658	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCN1_chr7_5587816_5611655	1/1	t0001	1303	282	53	64	114	11	38	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0002	1303	35	8	6	18	0	3	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0003	1303	18	5	5	7	0	1	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0004	1302	17	17	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0005	1303	9	9	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0006	1302	6	6	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0007	1303	3	0	0	0	1	2	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0008	1304	2	0	0	2	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0009	1303	2	1	1	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0010	1303	1	0	0	1	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0011	1304	1	0	0	1	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0012	1304	1	0	0	1	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	t0013	1303	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN2_chr17_81523377_81542130	0/1	t0001	206	310	53	65	135	13	43	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	1/0	t0002	206	114	42	12	47	5	7	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	t0003	206	6	0	6	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	t0004	206	1	0	1	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	t0005	206	1	1	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN3_chr7_127588736_127607144	0/0	t0001	641	349	84	57	161	14	33	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0002	641	52	3	16	24	2	7	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0003	641	7	6	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0004	641	6	3	0	1	0	2	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0005	641	2	0	0	2	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0006	641	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0007	641	1	1	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0008	641	1	1	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	t0009	641	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSD1L_chr9_105443034_105557433	1/0	t0001	6138	89	15	16	48	0	9	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0002	6141	79	1	10	64	0	4	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0003	6140	42	1	8	26	3	4	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/1	t0004	6147	42	17	12	8	2	2	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0005	6138	33	16	7	0	3	7	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0006	6140	9	0	3	6	0	0	copy fasta	FSD1L	chr9	105443034	105557433