JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FSD1L_chr9_105443034_105557433	0/0	t0007	6140	8	8	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0008	6138	8	0	0	8	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0009	6141	6	1	3	0	2	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0010	6148	5	4	1	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0011	6129	4	4	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0012	6140	4	4	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0013	6140	4	3	1	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0014	6138	4	4	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0015	6140	4	0	0	4	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0016	6141	3	0	0	3	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0017	6138	3	1	0	0	2	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0018	6140	2	0	0	0	0	2	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0019	6138	2	0	0	2	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0020	6140	2	0	2	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0021	6140	2	2	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0022	6138	2	2	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0023	6141	2	0	0	2	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0024	6138	2	0	0	2	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0025	6138	1	0	1	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0026	6141	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0027	6141	1	0	0	0	0	1	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0028	6141	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0029	6141	1	0	0	0	1	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0030	6138	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0031	6140	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0032	6138	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0033	6138	1	0	0	0	0	1	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0034	6141	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0035	6138	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0036	6140	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0037	6138	1	0	0	0	1	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0038	6138	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0039	6138	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0040	6148	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0041	6147	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0042	6147	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	t0043	6138	1	0	0	1	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1_chr19_4299598_4328836	1/1	t0001	343	411	98	74	177	16	44	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	t0002	360	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD2_chr15_82750362_82811069	0/0	t0001	4167	69	19	15	29	4	2	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	1/0	t0002	4169	59	9	9	22	3	15	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0003	4168	56	4	8	41	2	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0004	4168	42	0	10	25	0	7	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/1	t0005	4169	11	3	5	0	0	2	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0006	4170	11	4	4	0	2	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0007	4167	10	0	0	10	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0008	4167	9	9	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0009	4171	8	1	5	0	2	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0010	4168	7	0	0	7	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0011	4168	7	0	4	1	0	2	copy fasta	FSD2	chr15	82750362	82811069