JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FSD2_chr15_82750362_82811069	0/0	t0012	4168	6	0	1	4	1	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0013	4170	6	6	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0014	4169	4	4	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0015	4171	4	4	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0016	4166	4	0	0	2	1	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0017	4168	3	3	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0018	4169	3	0	1	1	0	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0019	4168	3	0	0	3	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0020	4169	3	0	1	0	2	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0021	4168	3	1	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0022	4168	3	0	2	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0023	4170	3	3	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0024	4170	3	0	3	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0025	4168	2	0	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0026	4167	2	1	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0027	4169	2	0	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0028	4168	2	0	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0029	4167	2	0	1	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0030	4170	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0031	4171	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0032	4170	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0033	4170	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0034	4166	2	0	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0035	4168	2	0	0	2	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0036	4168	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0037	4169	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0038	4168	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0039	4167	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0040	4168	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0041	4167	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0042	4169	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0043	4169	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0044	4170	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0045	4170	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0046	4169	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0047	4168	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0048	4170	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0049	4167	1	0	0	0	1	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0050	4169	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0051	4169	1	0	0	0	0	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0052	4167	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0053	4168	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0054	4169	1	0	0	0	0	1	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0055	4171	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0056	4167	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0057	4168	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0058	4167	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0059	4170	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	t0060	4167	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSHB_chr11_30226014_30240194	0/1	t0001	1467	200	40	33	100	5	21	copy fasta	FSHB	chr11	30226014	30240194