JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FSHB_chr11_30226014_30240194	1/0	t0002	1467	174	46	33	72	5	17	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0003	1467	6	0	3	0	2	1	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0004	1467	2	0	2	0	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0005	1467	1	0	0	1	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0006	1467	1	1	0	0	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0007	1467	1	1	0	0	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0008	1467	1	0	0	1	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0009	1467	1	0	1	0	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	t0010	1467	1	0	0	0	0	1	copy fasta	FSHB	chr11	30226014	30240194
FSHR_chr2_48957157_49159515	1/0	t0001	675	201	54	40	74	11	21	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/1	t0002	675	129	22	21	67	4	14	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0003	675	10	10	0	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0004	675	3	0	1	0	1	1	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0005	675	3	0	0	3	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0006	675	2	2	0	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0007	675	1	0	0	1	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	t0008	675	1	0	0	1	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSIP1_chr15_39595031_39787841	1/1	t0001	1071	182	26	38	91	6	19	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0002	1071	25	21	3	0	1	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0003	1071	19	18	1	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0004	1071	9	0	2	0	3	4	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0005	1071	4	3	1	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0006	1071	3	3	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0007	1071	2	0	0	2	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0008	1071	2	0	1	0	0	1	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0009	1071	2	2	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0010	1071	2	2	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0011	1071	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0012	1071	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0013	1071	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	t0014	1071	1	0	0	1	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP2_chr2_185733804_185838290	1/0	t0001	156	235	57	54	91	7	25	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/1	t0002	157	127	25	20	65	3	13	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	t0003	156	7	7	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	t0004	156	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSTL1_chr3_120387293_120455992	0/0	t0001	4756	84	5	6	67	0	6	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	1/0	t0002	4756	62	7	19	23	4	8	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0003	4756	43	6	3	30	0	4	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0004	4756	29	10	11	0	3	5	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/1	t0005	4756	27	4	10	1	6	5	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0006	4756	21	9	6	2	0	4	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0007	4753	15	10	1	0	0	4	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0008	4756	13	12	1	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0009	4755	8	8	0	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0010	4756	5	0	1	0	1	3	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0011	4756	3	3	0	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0012	4756	3	3	0	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0013	4756	2	0	0	0	0	2	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0014	4756	2	2	0	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	t0015	4756	2	2	0	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992