Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKT3_chr1_243494724_243855243	0/0	t0040	5839	1	0	0	0	0	1	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0041	5839	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0042	5839	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0043	5839	1	0	1	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0044	5839	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0045	5841	1	0	0	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0046	5841	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0047	5838	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0048	5839	1	0	0	0	1	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0049	5836	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	t0050	5832	1	1	0	0	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKTIP_chr16_53486040_53508209	1/1	t0001	1506	290	54	60	128	10	36	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0002	1510	59	13	10	18	4	14	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0003	1510	9	9	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0004	1510	9	0	0	9	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0005	1510	5	5	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0006	1510	4	4	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0007	1510	4	4	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0008	1510	2	2	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0009	1506	2	0	0	2	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0010	1510	1	1	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	t0011	1506	1	0	0	1	0	0	copy fasta	AKTIP	chr16	53486040	53508209
ALAD_chr9_113381312_113406284	0/0	t0001	2137	170	69	22	69	7	3	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0002	2137	94	4	22	47	5	16	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	1/1	t0003	2137	56	3	19	24	4	4	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0004	2137	51	8	4	38	0	1	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0005	2137	32	1	9	9	1	12	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0006	2137	7	0	3	2	0	2	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0007	2137	5	4	1	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0008	2137	5	0	0	5	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0009	2135	5	5	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0010	2137	4	0	0	4	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0011	2137	2	0	1	0	1	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0012	2137	2	0	2	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0013	2137	2	0	0	0	0	2	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0014	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0015	2137	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0016	2137	1	0	0	0	0	1	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0017	2137	1	0	0	0	0	1	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0018	2137	1	0	1	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0019	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0020	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0021	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0022	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0023	2137	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	t0024	2137	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAS1_chr3_52193160_52219327	1/1	t0001	453	345	86	70	138	16	33	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	t0002	453	6	2	2	1	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	t0003	453	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	t0004	453	1	0	0	1	0	0	copy fasta	ALAS1	chr3	52193160	52219327