JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FSTL3_chr19_671392_688385	0/0	t0038	1714	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL4_chr5_133191455_133617541	1/0	t0001	2868	50	16	6	18	1	8	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0002	2863	37	2	10	19	2	4	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0003	2863	33	16	3	10	0	4	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0004	2863	16	2	6	0	3	5	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0005	2863	8	1	4	0	1	2	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0006	2868	5	4	1	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0007	2863	4	2	2	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0008	2863	4	4	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0009	2863	3	3	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0010	2868	2	2	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0011	2868	2	1	1	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0012	2863	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0013	2863	1	0	1	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0014	2863	1	0	0	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0015	2868	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0016	2868	1	0	0	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0017	2863	1	0	0	1	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0018	2863	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0019	2863	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0020	2863	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/1	t0021	2863	1	0	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0022	2868	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	t0023	2863	1	0	0	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL5_chr4_161378897_162169000	1/1	t0001	2253	66	25	12	23	2	2	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0002	2252	15	10	0	3	1	1	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0003	2254	12	1	5	5	0	1	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0004	2253	9	0	5	2	2	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0005	2253	5	1	2	0	0	2	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0006	2253	5	4	1	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0007	2253	4	3	1	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0008	2254	3	0	0	3	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0009	2253	3	0	1	2	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0010	2252	2	1	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0011	2252	2	0	0	2	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0012	2253	2	0	0	2	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0013	2253	2	2	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0014	2253	2	2	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0015	2254	2	0	0	2	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0016	2253	2	0	1	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0017	2253	1	1	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0018	2253	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0019	2254	1	1	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0020	2253	1	0	0	0	1	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0021	2253	1	1	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	t0022	2253	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FST_chr5_53475629_53492134	1/1	t0001	1265	393	80	59	198	14	40	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0002	1266	28	6	3	14	2	3	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0003	1264	16	7	5	4	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0004	1261	16	1	7	2	0	6	copy fasta	FST	chr5	53475629	53492134