JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FST_chr5_53475629_53492134	0/0	t0005	1266	1	1	0	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0006	1265	1	1	0	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0007	1265	1	1	0	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0008	1265	1	0	0	1	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0009	1265	1	0	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0010	1265	1	0	0	1	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0011	1265	1	0	0	0	0	1	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0012	1265	1	1	0	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	t0013	1265	1	0	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FTCDNL1_chr2_199804272_199856192	0/1	t0001	3893	156	28	26	69	5	27	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0002	3893	66	7	13	42	0	4	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0003	3893	52	7	8	35	1	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0004	3893	15	0	0	15	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0005	3890	14	0	5	8	1	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	1/0	t0006	3894	7	3	0	2	1	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0007	3863	6	4	1	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0008	3892	6	0	4	0	1	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0009	3893	6	6	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0010	3892	6	1	5	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0011	3860	4	4	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0012	3894	4	1	2	0	0	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0013	3863	3	2	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0014	3893	3	0	0	3	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0015	3890	3	3	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0016	3893	3	0	0	3	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0017	3894	3	3	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0018	3894	2	0	0	2	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0019	3893	2	2	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0020	3893	2	2	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0021	3893	2	2	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0022	3863	1	1	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0023	3864	1	1	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0024	3863	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0025	3893	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0026	3893	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0027	3890	1	0	1	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0028	3893	1	0	0	0	0	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0029	3891	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0030	3894	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0031	3893	1	0	0	0	0	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0032	3894	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0033	3893	1	1	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0034	3892	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0035	3893	1	0	1	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0036	3893	1	1	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0037	3893	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0038	3893	1	0	0	1	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0039	3924	1	0	0	0	1	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	t0040	3983	1	1	0	0	0	0	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCD_chr21_46131779_46160579	0/1	t0001	265	105	27	37	25	3	12	copy fasta	FTCD	chr21	46131779	46160579