JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FTCD_chr21_46131779_46160579	1/0	t0002	265	61	27	7	7	6	13	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0003	265	21	5	2	10	0	4	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0004	265	11	0	3	7	1	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0005	265	9	0	0	9	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0006	265	7	7	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0007	265	7	4	1	0	2	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0008	265	5	0	0	4	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	t0009	265	4	0	0	2	2	0	copy fasta	FTCD	chr21	46131779	46160579
FTH1_chr11_61959285_61972634	1/1	t0001	652	312	88	75	104	16	27	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	t0002	652	71	1	3	52	0	15	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	t0003	652	6	6	0	0	0	0	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	t0004	652	1	1	0	0	0	0	copy fasta	FTH1	chr11	61959285	61972634
FTHL17_chrX_31066233_31077041	1/1	t0001	258	329	74	60	146	13	34	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	t0002	258	4	4	0	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	t0003	259	1	0	0	1	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	t0004	259	1	0	0	1	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	t0005	257	1	0	0	1	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTL_chr19_48960309_48971879	1/1	t0001	344	405	96	76	168	16	47	copy fasta	FTL	chr19	48960309	48971879
FTL_chr19_48960309_48971879	0/0	t0002	344	1	0	0	0	0	1	copy fasta	FTL	chr19	48960309	48971879
FTMT_chr5_121846882_121857833	1/1	t0001	224	412	96	80	170	16	48	copy fasta	FTMT	chr5	121846882	121857833
FTO_chr16_53699156_54126941	0/0	t0001	10055	26	1	6	12	1	6	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/1	t0002	10056	15	0	4	6	1	3	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0003	10056	15	2	0	11	1	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	1/0	t0004	10056	14	0	7	0	3	3	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0005	10058	12	4	1	1	1	5	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0006	10056	9	8	1	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0007	10055	7	1	3	0	0	3	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0008	10054	7	0	1	3	1	2	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0009	10053	5	5	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0010	10055	5	5	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0011	10056	4	0	0	4	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0012	10054	4	4	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0013	10056	3	3	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0014	10055	3	0	0	3	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0015	10054	3	0	3	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0016	10055	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0017	10053	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0018	10057	2	0	2	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0019	10056	2	0	0	2	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0020	10054	2	0	0	2	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0021	10055	2	0	0	2	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0022	10055	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0023	10055	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0024	10056	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0025	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0026	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0027	10053	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0028	10053	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0029	10053	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0030	10053	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941