JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FTO_chr16_53699156_54126941	0/0	t0031	10053	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0032	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0033	10054	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0034	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0035	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0036	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0037	10056	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0038	10056	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0039	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0040	10056	1	0	1	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0041	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0042	10056	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0043	10056	1	0	1	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0044	10057	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0045	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0046	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0047	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0048	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0049	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0050	10054	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0051	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0052	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0053	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0054	10054	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0055	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0056	10055	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0057	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0058	10055	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0059	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0060	10055	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0061	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0062	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0063	10055	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0064	10058	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0065	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0066	10056	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0067	10054	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0068	10056	1	0	0	0	0	1	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	t0069	10056	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTSJ1_chrX_48471199_48491350	1/1	t0001	910	281	62	56	119	9	33	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0002	910	10	9	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0003	910	3	3	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0004	910	3	3	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0005	910	1	0	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0006	910	1	1	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0007	911	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0008	908	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0009	909	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0010	909	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0011	910	1	0	0	0	0	1	copy fasta	FTSJ1	chrX	48471199	48491350