JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FTSJ1_chrX_48471199_48491350	0/0	t0012	910	1	1	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0013	911	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0014	910	1	1	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	t0015	916	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ3_chr17_63814433_63832663	0/1	t0001	1009	243	69	44	96	10	23	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	1/0	t0002	1008	100	2	20	60	6	11	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0003	1009	9	9	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0004	1009	4	4	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0005	1009	4	4	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0006	1009	2	2	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0007	1009	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0008	1009	1	0	0	0	1	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0009	1008	1	0	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0010	1008	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0011	1009	1	0	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0012	1009	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0013	1009	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0014	1009	1	0	0	0	1	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0015	1009	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	t0016	1009	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FUBP1_chr1_77939055_77984072	1/1	t0001	4780	154	33	39	55	7	18	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0002	4781	19	1	0	17	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0003	4779	17	11	1	5	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0004	4782	14	8	0	6	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0005	4781	13	0	6	6	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0006	4782	9	5	2	0	0	2	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0007	4780	8	3	3	0	1	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0008	4779	7	0	1	0	0	6	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0009	4780	7	7	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0010	4782	5	1	0	4	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0011	4780	3	0	0	3	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0012	4781	2	2	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0013	4780	2	0	1	0	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0014	4780	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0015	4782	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0016	4779	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0017	4779	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0018	4779	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0019	4780	1	0	1	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0020	4780	1	0	0	1	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0021	4780	1	0	0	1	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0022	4782	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0023	4780	1	0	0	0	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0024	4780	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0025	4782	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0026	4780	1	0	0	1	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0027	4782	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0028	4780	1	0	0	0	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0029	4780	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	t0030	4780	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072