JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUBP1_chr1_77939055_77984072	0/0	t0031	4780	1	0	0	1	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP3_chr9_130574577_130643352	1/1	t0001	1435	339	88	60	143	9	37	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0002	1436	17	0	2	14	0	1	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0003	1435	5	0	0	5	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0004	1435	4	0	2	0	1	1	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0005	1435	4	4	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0006	1435	2	0	0	0	0	2	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0007	1435	2	0	0	2	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0008	1435	1	0	1	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0009	1435	1	0	0	0	0	1	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0010	1435	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0011	1435	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	t0012	1436	1	0	1	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUCA1_chr1_23840077_23873290	1/1	t0001	643	373	88	78	155	18	32	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	t0002	643	3	3	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	t0003	643	2	2	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	t0004	643	1	0	0	1	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	t0005	643	1	1	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA2_chr6_143489812_143516720	1/1	t0001	982	262	60	40	124	7	29	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0002	982	77	12	14	39	2	10	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0003	983	73	2	21	36	7	7	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0004	982	12	10	0	2	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0005	983	6	0	5	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0006	983	4	3	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0007	982	3	3	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0008	982	2	2	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0009	982	1	0	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0010	982	1	0	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0011	982	1	0	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0012	982	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	t0013	982	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUNDC1_chrX_44518639_44547859	1/1	t0001	587	288	69	45	129	11	32	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	t0002	586	22	11	2	9	0	0	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	t0003	587	3	0	0	3	0	0	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC2_chrX_155021844_155065304	1/1	t0001	5728	100	4	16	66	2	10	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0002	5727	44	2	15	12	4	11	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0003	5728	20	10	4	6	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0004	5728	9	9	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0005	5728	8	6	0	1	1	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0006	5727	8	8	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0007	5729	6	5	1	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0008	5727	6	5	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0009	5727	5	0	0	5	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0010	5728	4	0	0	4	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0011	5661	3	0	1	2	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0012	5728	3	0	0	3	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0013	5727	2	0	2	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0014	5738	2	0	0	0	0	2	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0015	5727	2	2	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0016	5709	2	2	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304