JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUNDC2_chrX_155021844_155065304	0/0	t0017	5728	2	2	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0018	5694	2	2	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0019	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0020	5618	1	0	1	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0021	5730	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0022	5729	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0023	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0024	5709	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0025	5727	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0026	5727	1	0	0	0	1	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0027	5728	1	0	0	0	0	1	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0028	5727	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0029	5727	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0030	5709	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0031	5706	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0032	5683	1	0	0	0	1	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0033	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0034	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0035	5728	1	0	0	0	0	1	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0036	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0037	5729	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0038	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0039	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0040	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0041	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0042	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0043	5718	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0044	5618	1	0	1	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0045	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0046	5728	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0047	5729	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0048	5727	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0049	5727	1	0	1	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0050	5726	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0051	5727	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0052	5727	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0053	5726	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0054	5727	1	0	1	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0055	5698	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0056	5720	1	0	0	0	0	1	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	t0057	5728	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUOM_chr10_133350158_133363019	1/1	t0001	225	374	84	68	166	15	39	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	t0002	225	16	10	4	0	2	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	t0003	225	3	3	0	0	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	t0004	225	1	0	0	0	0	1	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	t0005	225	1	1	0	0	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	t0006	225	1	0	0	0	1	0	copy fasta	FUOM	chr10	133350158	133363019
FURIN_chr15_90863588_90888457	1/0	t0001	1863	127	6	33	63	5	19	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0002	1863	94	24	16	43	1	10	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/1	t0003	1863	71	29	11	18	3	9	copy fasta	FURIN	chr15	90863588	90888457