JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FURIN_chr15_90863588_90888457	0/0	t0004	1863	20	19	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0005	1863	17	2	4	0	7	4	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0006	1863	9	9	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0007	1863	5	0	0	5	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0008	1863	3	0	0	0	0	3	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0009	1869	3	2	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0010	1863	2	0	0	0	2	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0011	1863	2	2	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0012	1869	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0013	1863	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0014	1863	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0015	1863	1	0	0	0	0	1	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0016	1863	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0017	1863	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	t0018	1863	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FUS_chr16_31175139_31196605	0/1	t0001	244	311	64	66	132	12	36	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	1/0	t0002	244	21	20	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	t0003	244	9	9	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	t0004	244	3	1	0	0	2	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	t0005	244	2	2	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUT10_chr8_33365824_33478146	0/1	t0001	2110	187	56	30	84	2	14	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	1/0	t0002	2110	22	1	6	2	2	10	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0003	2109	22	0	0	19	0	3	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0004	2110	5	5	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0005	2109	5	5	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0006	2110	4	3	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0007	2110	4	4	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0008	2110	3	3	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0009	2110	2	0	2	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0010	2109	2	2	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0011	2110	2	2	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0012	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0013	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0014	2110	1	0	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0015	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0016	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0017	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0018	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0019	2110	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0020	2110	1	0	0	1	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	t0021	2110	1	0	0	0	0	1	copy fasta	FUT10	chr8	33365824	33478146
FUT11_chr10_73767276_73781219	1/1	t0001	593	326	70	50	163	9	32	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0002	593	61	15	8	30	1	7	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0003	593	3	0	1	0	2	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0004	593	1	0	0	0	0	1	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0005	593	1	0	0	1	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0006	593	1	1	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	t0007	593	1	0	1	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT1_chr19_48743011_48757641	0/0	t0001	2327	159	18	21	104	1	15	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/1	t0002	2329	76	5	17	42	5	6	copy fasta	FUT1	chr19	48743011	48757641