JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT1_chr19_48743011_48757641	1/0	t0003	2328	43	10	17	1	5	9	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0004	2331	32	10	3	12	0	7	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0005	2331	32	0	8	23	0	1	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0006	2330	19	18	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0007	2329	9	4	3	0	0	2	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0008	2328	8	3	0	5	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0009	2331	6	2	1	0	0	3	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0010	2327	6	2	0	4	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0011	2329	5	5	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0012	2330	4	4	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0013	2326	4	1	3	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0014	2329	3	0	0	1	1	1	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0015	2331	3	2	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0016	2331	3	3	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0017	2330	2	2	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0018	2331	2	0	0	0	0	2	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0019	2329	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0020	2329	1	0	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0021	2325	1	0	0	0	1	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0022	2330	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0023	2330	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0024	2330	1	0	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0025	2332	1	0	0	0	0	1	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0026	2329	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0027	2330	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0028	2330	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0029	2331	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0030	2331	1	0	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0031	2331	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0032	2332	1	0	0	0	0	1	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0033	2327	1	0	0	0	1	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0034	2327	1	0	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0035	2327	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0036	2327	1	0	1	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0037	2328	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0038	2328	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0039	2294	1	0	0	0	0	1	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	t0040	2329	1	0	0	0	0	1	copy fasta	FUT1	chr19	48743011	48757641
FUT2_chr19_48690971_48710951	0/0	t0001	2085	194	13	39	116	6	20	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/1	t0002	2086	49	4	10	30	0	4	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0003	2079	45	13	15	0	7	10	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0004	2084	14	5	3	6	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0005	2080	13	5	5	0	0	3	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0006	2085	10	10	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0007	2086	6	2	2	1	0	1	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0008	2089	6	6	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	1/0	t0009	2085	5	0	0	4	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0010	2077	5	5	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0011	2086	4	4	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0012	2087	4	4	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951