JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT2_chr19_48690971_48710951	0/0	t0013	120	4	0	0	0	0	4	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0014	2076	3	3	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0015	2088	3	3	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0016	2087	2	0	0	1	0	1	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0017	2085	2	1	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0018	2085	2	2	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0019	2076	2	1	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0020	2072	2	1	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0021	2079	2	0	0	0	0	2	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0022	2090	2	2	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0023	2086	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0024	2085	1	0	0	0	1	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0025	2085	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0026	2085	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0027	2085	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0028	2085	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0029	2085	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0030	2085	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0031	2076	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0032	2085	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0033	2072	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0034	2078	1	0	0	0	0	1	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0035	2091	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0036	2076	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	t0037	2084	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT4_chr11_94538921_94554895	0/0	t0001	4384	160	18	37	85	4	16	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0002	4383	128	28	24	56	4	16	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/1	t0003	4384	45	12	1	25	1	5	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	1/0	t0004	4383	10	0	0	9	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0005	4387	9	9	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0006	4383	6	0	2	0	2	2	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0007	4383	5	4	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0008	4384	5	5	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0009	4384	4	3	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0010	4383	4	4	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0011	4384	4	0	0	4	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0012	4383	3	0	2	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0013	4385	3	3	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0014	4384	2	2	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0015	4387	2	2	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0016	4385	2	0	0	2	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0017	4387	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0018	4388	1	0	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0019	4384	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0020	4384	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0021	4387	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0022	4387	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0023	4387	1	0	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0024	4385	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0025	4383	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895