JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT4_chr11_94538921_94554895	0/0	t0026	4382	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0027	4383	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0028	4383	1	0	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0029	4383	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0030	4383	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0031	4384	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0032	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0033	4383	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0034	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0035	4384	1	0	0	0	1	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0036	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0037	4383	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0038	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0039	4385	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0040	4383	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0041	4383	1	0	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0042	4383	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0043	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0044	4384	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0045	4384	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	t0046	4384	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT5_chr19_5860826_5875540	0/0	t0001	864	170	16	40	92	5	17	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0002	864	79	7	4	59	1	8	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0003	864	47	7	7	30	0	3	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0004	864	33	18	1	11	0	3	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0005	864	30	3	12	8	6	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/1	t0006	848	25	5	9	2	3	5	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0007	848	15	13	1	0	1	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0008	864	14	8	2	2	0	2	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	1/0	t0009	864	7	0	1	0	0	5	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0010	848	6	6	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0011	864	6	5	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0012	864	5	5	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0013	848	4	0	3	0	0	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0014	864	4	3	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0015	880	2	0	2	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0016	864	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0017	864	1	0	0	0	0	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0018	864	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0019	848	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	t0020	848	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT6_chr19_5825408_5844702	0/0	t0001	2250	87	9	13	59	1	5	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/1	t0002	2248	66	7	12	33	5	8	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0003	2251	50	9	10	24	0	7	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0004	2247	31	0	8	9	3	11	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0005	2248	24	7	10	1	4	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0006	2249	15	0	5	8	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0007	2246	15	4	0	8	0	3	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0008	2249	14	2	7	5	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0009	2247	13	9	1	3	0	0	copy fasta	FUT6	chr19	5825408	5844702