JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT6_chr19_5825408_5844702	0/0	t0010	2252	12	4	5	1	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0011	2247	10	9	1	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0012	2247	9	9	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0013	2248	7	0	0	7	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0014	2247	6	1	0	5	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0015	2248	5	0	3	0	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0016	2252	4	4	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0017	2248	3	2	1	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0018	2249	3	3	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0019	2250	3	0	0	3	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0020	2246	3	0	1	1	0	1	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0021	2249	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0022	2247	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0023	2248	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0024	2248	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0025	2248	2	2	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0026	2247	2	0	2	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0027	2248	2	0	0	0	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0028	2251	2	2	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0029	2250	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0030	2246	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0031	2247	2	2	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0032	2247	2	0	0	2	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0033	2248	2	0	0	0	2	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0034	2247	2	0	0	0	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0035	2248	2	0	1	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0036	2249	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0037	2247	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0038	2251	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0039	2250	1	0	0	0	0	1	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0040	2248	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0041	2250	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0042	2250	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0043	2250	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0044	2249	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0045	2247	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0046	2248	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0047	2249	1	0	0	0	1	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0048	2250	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0049	2248	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0050	2251	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0051	2247	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0052	2251	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0053	2249	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0054	2250	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0055	2250	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0056	2249	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0057	2250	1	0	1	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0058	2248	1	0	0	0	0	1	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0059	2249	1	0	0	0	0	1	copy fasta	FUT6	chr19	5825408	5844702