JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT6_chr19_5825408_5844702	1/0	t0060	2247	1	0	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	t0061	2247	1	0	1	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT7_chr9_137025174_137037088	0/0	t0001	634	241	62	44	96	11	28	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	1/1	t0002	634	74	6	29	23	5	9	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0003	634	31	12	11	6	2	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0004	634	5	5	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0005	634	2	2	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0006	634	1	0	0	1	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0007	634	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0008	634	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0009	634	1	0	0	0	0	1	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	t0010	634	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT8_chr14_65407730_65749121	1/0	t0001	2522	164	43	21	76	5	18	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/1	t0002	2522	107	20	29	41	6	10	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0003	2522	23	1	1	21	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0004	2522	20	0	0	19	1	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0005	2521	14	7	3	0	0	4	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0006	2523	9	9	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0007	2522	7	1	5	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0008	2523	6	6	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0009	2522	3	3	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0010	2522	3	2	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0011	2522	2	0	0	0	1	1	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0012	2522	2	1	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0013	2522	1	0	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0014	2522	1	0	0	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0015	2522	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0016	2521	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0017	2522	1	0	0	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0018	2522	1	0	0	0	0	1	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0019	2523	1	0	0	0	1	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0020	2522	1	0	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0021	2522	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0022	2522	1	0	0	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0023	2522	1	0	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0024	2522	1	0	0	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0025	2522	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	t0026	2523	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT9_chr6_96010974_96220612	0/0	t0001	11715	50	3	0	41	1	5	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0002	11714	41	1	5	29	3	3	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0003	11716	39	9	10	17	2	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0004	11715	24	0	1	20	0	3	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0005	11715	23	2	8	10	2	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	1/0	t0006	11714	16	14	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0007	11715	9	9	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0008	11715	8	4	2	0	1	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0009	11715	7	4	1	0	0	2	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0010	11714	5	4	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0011	11715	4	0	0	4	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0012	11715	3	0	2	0	1	0	copy fasta	FUT9	chr6	96010974	96220612