JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT9_chr6_96010974_96220612	0/0	t0013	11716	3	3	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0014	11714	3	1	2	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0015	11715	3	3	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0016	11714	3	0	0	3	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0017	11714	3	0	0	3	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0018	11710	3	2	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0019	11715	2	0	0	2	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0020	11715	2	0	0	0	0	2	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0021	11715	2	2	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0022	11715	2	0	1	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0023	11714	2	1	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0024	11715	2	1	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0025	11716	2	0	2	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0026	11717	2	2	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0027	11714	2	2	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0028	11716	2	0	2	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0029	11715	2	0	1	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0030	11715	2	0	0	0	1	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0031	11715	2	1	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0032	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0033	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0034	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0035	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0036	11715	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0037	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0038	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0039	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0040	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0041	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0042	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0043	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0044	11715	1	0	0	0	1	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0045	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0046	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0047	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0048	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0049	11715	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0050	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0051	11715	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0052	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0053	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0054	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/1	t0055	11715	1	0	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0056	11714	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0057	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0058	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0059	11714	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0060	11714	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0061	11714	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0062	11714	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612