JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FUT9_chr6_96010974_96220612	0/0	t0063	11714	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0064	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0065	11715	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0066	11716	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0067	11716	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0068	11717	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0069	11714	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0070	11715	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0071	11714	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0072	11714	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0073	11714	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0074	11714	1	0	1	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0075	11714	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0076	11714	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0077	11714	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	t0078	11715	1	0	0	0	0	1	copy fasta	FUT9	chr6	96010974	96220612
FUZ_chr19_49801866_49818292	1/1	t0001	472	384	84	75	159	14	50	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	t0002	472	23	4	3	16	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	t0003	472	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	t0004	472	1	0	0	1	0	0	copy fasta	FUZ	chr19	49801866	49818292
FXN_chr9_69030752_69084076	0/1	t0001	6345	70	9	9	40	1	10	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0002	6351	70	2	18	47	0	3	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0003	6350	53	2	7	37	3	4	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0004	6346	31	0	6	25	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0005	6350	30	15	1	6	5	3	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0006	6351	27	11	7	2	3	4	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0007	6354	14	3	0	9	0	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0008	6346	12	3	5	0	2	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0009	6343	10	9	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0010	6344	6	0	2	2	0	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	1/0	t0011	6346	5	4	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0012	6351	5	1	0	0	2	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0013	6352	5	0	0	5	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0014	6359	4	3	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0015	6354	4	4	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0016	6354	4	0	0	4	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0017	6351	4	3	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0018	6345	3	0	1	0	2	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0019	6345	3	0	0	3	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0020	6345	3	3	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0021	6341	3	3	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0022	6345	3	0	3	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0023	6367	3	3	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0024	6353	3	0	0	3	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0025	6345	2	0	0	2	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0026	6344	2	0	0	0	0	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0027	6345	2	0	0	2	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0028	6350	2	0	0	0	0	2	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0029	6354	2	0	0	2	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0030	6347	2	0	0	0	0	2	copy fasta	FXN	chr9	69030752	69084076