JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FXN_chr9_69030752_69084076	0/0	t0031	6350	2	0	0	2	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0032	6352	2	2	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0033	6341	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0034	6346	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0035	6345	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0036	6345	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0037	6345	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0038	6345	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0039	6345	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0040	6345	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0041	6345	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0042	6345	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0043	6346	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0044	6345	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0045	6346	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0046	6346	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0047	6346	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0048	6343	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0049	6345	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0050	6346	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0051	6343	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0052	6354	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0053	6354	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0054	6354	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0055	6358	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0056	6355	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0057	6351	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0058	6351	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0059	6347	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0060	6351	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0061	6351	1	0	1	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0062	6350	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0063	6350	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0064	6351	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0065	6352	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0066	6351	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0067	6349	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0068	6349	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0069	6344	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0070	6350	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0071	6349	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0072	6348	1	1	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	t0073	6350	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXR1_chr3_180907670_180987753	0/0	t0001	6479	83	19	12	38	5	9	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/1	t0002	6478	50	1	9	27	5	7	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0003	6477	38	7	9	17	2	3	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	1/0	t0004	6478	36	0	11	13	3	8	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0005	6480	14	10	4	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0006	6478	8	0	0	8	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0007	6479	7	0	0	7	0	0	copy fasta	FXR1	chr3	180907670	180987753