JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FXR1_chr3_180907670_180987753	0/0	t0008	6478	7	0	2	5	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0009	6481	6	5	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0010	6478	6	6	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0011	6479	6	4	2	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0012	6477	5	4	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0013	6478	4	1	2	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0014	6478	3	2	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0015	6480	3	2	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0016	6476	3	0	0	0	0	3	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0017	6479	3	0	2	0	1	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0018	6479	2	2	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0019	6479	2	0	2	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0020	6478	2	0	0	2	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0021	6477	2	0	1	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0022	6477	2	0	0	0	0	2	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0023	6478	2	0	0	0	1	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0024	6479	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0025	6477	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0026	6477	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0027	6478	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0028	6476	1	0	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0029	6478	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0030	6478	1	0	0	0	0	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0031	6478	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0032	6479	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0033	6479	1	0	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0034	6479	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0035	6479	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0036	6479	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0037	6478	1	0	0	0	0	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0038	6479	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0039	6478	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0040	6478	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0041	6477	1	0	0	0	1	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0042	6477	1	0	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0043	6477	1	0	0	0	0	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0044	6479	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0045	6479	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0046	6478	1	0	1	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0047	6477	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0048	6480	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	t0049	6480	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR2_chr17_7586230_7619897	1/1	t0001	966	423	95	78	190	14	44	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	t0002	966	1	1	0	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	t0003	966	1	0	1	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	t0004	966	1	0	1	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXYD1_chr19_35133824_35148109	0/1	t0001	298	406	98	76	175	14	42	copy fasta	FXYD1	chr19	35133824	35148109
FXYD1_chr19_35133824_35148109	1/0	t0002	298	1	0	0	0	0	0	copy fasta	FXYD1	chr19	35133824	35148109
FXYD1_chr19_35133824_35148109	0/0	t0003	298	1	0	0	1	0	0	copy fasta	FXYD1	chr19	35133824	35148109
FXYD2_chr11_117815057_117829744	1/0	t0001	389	304	65	49	147	4	38	copy fasta	FXYD2	chr11	117815057	117829744