JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FXYD2_chr11_117815057_117829744	0/0	t0002	389	79	6	10	54	5	4	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/1	t0003	389	76	12	27	21	9	6	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0004	389	7	7	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0005	389	5	5	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0006	389	4	4	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0007	389	4	0	0	4	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0008	389	1	0	0	0	0	1	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0009	389	1	1	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	t0010	372	1	0	0	0	0	1	copy fasta	FXYD2	chr11	117815057	117829744
FXYD3_chr19_35110823_35129324	1/1	t0001	1115	159	39	26	79	5	8	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0002	1115	121	23	18	40	6	34	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0003	1115	111	11	31	58	3	8	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0004	1115	6	5	1	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0005	1115	4	4	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0006	1115	4	4	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0007	1115	3	2	1	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0008	1115	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0009	1115	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0010	1114	1	0	0	1	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0011	1115	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0012	1115	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	t0013	1115	1	0	1	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD4_chr10_43366636_43381335	1/1	t0001	510	248	47	53	108	15	23	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	t0002	510	165	42	15	89	1	18	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	t0003	510	12	1	6	1	2	2	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	t0004	510	1	0	0	0	0	1	copy fasta	FXYD4	chr10	43366636	43381335
FXYD5_chr19_35149735_35174881	1/1	t0001	342	303	63	42	165	11	20	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0002	342	96	32	23	18	4	19	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0003	342	55	1	15	31	1	7	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0004	342	3	1	2	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0005	342	2	2	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0006	342	1	0	1	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0007	342	1	1	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	t0008	342	1	0	1	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD6_chr11_117831981_117881658	0/1	t0001	1389	162	33	31	85	2	10	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0002	1391	102	22	10	52	5	13	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0003	1391	87	1	18	46	7	15	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	1/0	t0004	1391	45	29	10	2	2	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0005	1391	8	0	0	7	0	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0006	1389	3	2	0	0	0	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0007	1389	3	2	1	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0008	1391	2	0	2	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0009	1389	2	2	0	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0010	1393	2	1	1	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0011	1389	1	1	0	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0012	1389	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0013	1389	1	1	0	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0014	1389	1	1	0	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0015	1389	1	0	0	0	0	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0016	1391	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658