JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FXYD6_chr11_117831981_117881658	0/0	t0017	1391	1	0	0	0	0	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0018	1391	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0019	1391	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0020	1391	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0021	1393	1	0	0	1	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0022	1393	1	0	0	0	0	1	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0023	1393	1	0	1	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	t0024	1389	1	1	0	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD7_chr19_35138255_35159302	1/1	t0001	466	381	84	69	168	18	40	copy fasta	FXYD7	chr19	35138255	35159302
FXYD7_chr19_35138255_35159302	0/0	t0002	466	63	16	15	28	0	4	copy fasta	FXYD7	chr19	35138255	35159302
FYB1_chr5_39100252_39224563	0/0	t0001	2340	69	3	13	33	4	16	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	1/0	t0002	2340	54	15	4	30	1	3	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/1	t0003	2340	52	22	3	26	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0004	2340	34	2	4	20	3	5	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0005	2340	29	3	8	12	2	4	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0006	2340	24	8	1	11	0	4	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0007	2340	12	11	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0008	2340	11	0	0	11	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0009	2340	7	5	2	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0010	2340	6	6	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0011	2340	5	0	0	5	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0012	2340	3	3	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0013	2340	3	3	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0014	2340	2	2	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0015	2340	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0016	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0017	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0018	2340	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0019	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0020	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0021	2340	1	0	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0022	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0023	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0024	2340	1	0	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0025	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0026	2340	1	0	0	0	0	1	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0027	2340	1	0	0	0	0	1	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0028	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	t0029	2340	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB2_chr1_56713789_56824404	0/0	t0001	997	282	69	49	128	6	30	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	1/1	t0002	997	69	0	16	41	2	8	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	t0003	997	23	20	3	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	t0004	997	5	0	0	5	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	t0005	997	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYCO1_chr3_45912903_46000824	0/0	t0001	4080	94	8	16	59	3	8	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0002	4079	54	0	5	46	3	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0003	4079	32	10	4	18	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0004	4079	31	9	2	14	3	3	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0005	4078	22	1	7	1	2	11	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0006	4079	14	13	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824