JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FYCO1_chr3_45912903_46000824	1/1	t0007	4078	13	1	7	0	3	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0008	4078	12	9	2	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0009	4078	7	3	0	0	0	4	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0010	4079	6	4	2	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0011	4079	5	1	1	3	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0012	4080	4	4	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0013	4079	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0014	4079	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0015	4078	3	0	1	2	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0016	4078	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0017	4080	2	0	0	2	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0018	4079	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0019	4079	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0020	4077	2	1	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0021	4079	2	0	0	0	0	2	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0022	4079	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0023	4078	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0024	4079	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0025	4078	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0026	4079	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0027	4080	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0028	4080	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0029	4080	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0030	4080	1	0	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0031	4079	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0032	4078	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0033	4079	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0034	4079	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0035	4077	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0036	4079	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0037	4079	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0038	4078	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	t0039	4078	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYN_chr6_111655332_111878452	0/0	t0001	2015	61	31	6	16	1	7	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/1	t0002	2015	43	3	11	24	0	4	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	1/0	t0003	2015	19	3	5	4	0	6	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0004	2015	19	11	3	5	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0005	2015	15	4	0	11	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0006	2015	14	3	4	7	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0007	2015	13	1	5	6	1	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0008	2015	10	10	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0009	2015	7	0	0	7	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0010	2015	6	6	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0011	2015	5	1	1	2	0	1	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0012	2015	4	1	1	0	0	2	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0013	2015	3	0	0	3	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0014	2015	2	2	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0015	2015	2	0	0	2	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0016	2015	2	0	0	2	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	t0017	2015	1	1	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452