Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH18A1_chr10_95600941_95661711	0/0	t0002	965	50	7	29	6	4	4	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/1	t0003	965	27	1	13	5	2	5	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0004	965	14	0	0	14	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0005	965	8	0	4	0	3	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0006	965	7	0	0	7	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0007	965	2	0	1	0	1	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0008	965	1	1	0	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0009	965	1	1	0	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0010	965	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0011	965	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0012	965	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	t0013	965	1	1	0	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH1A1_chr9_72895671_72958053	1/1	t0001	591	272	67	51	108	12	32	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	t0002	591	13	10	3	0	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	t0003	591	7	0	0	5	0	2	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	t0004	591	7	0	0	7	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	t0005	590	6	6	0	0	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	t0006	591	1	1	0	0	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A2_chr15_57948429_58070711	1/0	t0001	1830	132	38	21	54	3	15	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/1	t0002	1830	77	15	14	32	4	11	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0003	1830	66	13	12	36	0	5	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0004	1830	7	7	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0005	1830	7	7	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0006	1830	4	4	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0007	1830	4	0	3	0	0	1	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0008	1830	4	4	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0009	1830	3	2	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0010	1830	2	0	0	2	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0011	1830	2	0	0	2	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0012	1830	2	0	2	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0013	1830	2	0	1	0	1	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0014	1830	1	0	0	0	1	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0015	1830	1	0	0	0	0	1	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0016	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0017	1830	1	0	0	0	1	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0018	1830	1	0	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0019	1830	1	0	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0020	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0021	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0022	1830	1	0	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0023	1830	1	0	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0024	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0025	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0026	1830	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	t0027	1830	1	0	0	0	0	1	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A3_chr15_100874831_100921626	1/0	t0001	1931	106	29	25	42	4	5	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/1	t0002	1931	99	2	27	59	1	9	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0003	1931	85	8	6	45	10	16	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0004	1931	34	12	2	19	0	1	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	t0005	1931	18	15	3	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626