JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FYTTD1_chr3_197744883_197792596	0/0	t0043	5776	1	0	0	1	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0044	5762	1	0	0	0	0	1	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0045	5776	1	1	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0046	5777	1	0	0	1	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0047	5777	1	0	0	0	0	1	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0048	5777	1	0	0	0	0	1	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0049	5776	1	1	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0050	5765	1	1	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0051	5776	1	0	0	0	0	1	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0052	5762	1	0	0	1	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	t0053	5776	1	1	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FZD10_chr12_130157464_130170740	0/0	t0001	1531	131	21	14	82	1	13	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/1	t0002	1532	84	29	24	10	6	14	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0003	1532	65	4	15	40	5	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0004	1531	51	1	14	32	0	4	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	1/0	t0005	1532	36	29	3	0	0	3	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0006	1532	18	1	5	2	3	7	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0007	1531	15	0	3	11	0	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0008	1532	14	1	4	6	2	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0009	1531	7	0	0	5	0	2	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0010	1532	5	3	0	1	0	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0011	1532	3	0	0	3	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0012	1531	3	2	1	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0013	1531	2	0	0	2	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0014	1531	2	0	0	2	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0015	1531	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0016	1532	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0017	1531	1	0	0	0	0	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0018	1531	1	0	1	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0019	1532	1	0	0	0	0	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0020	1531	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0021	1531	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0022	1531	1	0	0	0	1	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0023	1531	1	0	0	0	0	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0024	1532	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0025	1532	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0026	1532	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0027	1532	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	t0028	1532	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD1_chr7_91259433_91276326	1/0	t0001	4951	155	16	36	80	4	18	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0002	4951	131	34	22	59	3	13	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/1	t0003	4949	66	2	4	50	3	6	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0004	4951	10	7	0	1	0	2	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0005	4951	7	6	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0006	4951	6	6	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0007	4948	6	5	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0008	4951	6	5	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0009	4951	2	0	2	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0010	4951	2	0	0	0	0	2	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0011	4951	2	1	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326