JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD1_chr7_91259433_91276326	0/0	t0012	4951	2	0	0	0	2	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0013	4951	2	2	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0014	4951	2	2	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0015	4951	2	2	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0016	4951	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0017	4951	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0018	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0019	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0020	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0021	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0022	4951	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0023	4951	1	0	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0024	4951	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0025	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0026	4951	1	0	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0027	4951	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0028	4951	1	0	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0029	4951	1	0	0	0	0	1	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	t0030	4951	1	0	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD2_chr17_44552484_44566262	0/0	t0001	2082	200	33	42	88	13	24	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	1/1	t0002	2082	57	8	5	39	0	3	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0003	2083	35	17	3	6	3	6	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0004	2082	34	12	14	7	1	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0005	2083	15	1	1	9	0	4	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0006	2081	6	6	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0007	2083	5	3	1	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0008	2083	5	0	0	4	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0009	2082	5	0	2	1	1	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0010	2083	5	2	1	2	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0011	2083	5	0	0	5	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0012	2083	2	0	1	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0013	2082	2	2	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0014	2084	2	0	0	0	0	2	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0015	2083	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0016	2083	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0017	2083	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0018	2082	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0019	2083	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0020	2083	1	0	1	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0021	2082	1	0	1	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0022	2081	1	0	0	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0023	2081	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0024	2082	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0025	2082	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0026	2082	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0027	2082	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0028	2082	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0029	2082	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0030	2083	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	t0031	2083	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262