JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD2_chr17_44552484_44566262	0/0	t0032	2083	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD3_chr8_28489212_28579258	0/0	t0001	11775	73	8	17	37	4	7	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/1	t0002	11773	65	9	14	31	3	7	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	1/0	t0003	11770	11	5	3	0	1	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0004	11769	10	0	0	10	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0005	11776	10	0	1	8	1	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0006	11773	7	3	0	4	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0007	11775	6	0	0	6	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0008	11773	6	6	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0009	11774	6	1	0	4	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0010	11774	5	0	0	5	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0011	11776	5	5	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0012	11776	5	5	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0013	11767	5	3	2	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0014	11770	4	0	0	4	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0015	11775	4	4	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0016	11774	4	1	0	3	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0017	11760	4	0	0	4	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0018	11764	4	4	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0019	11776	4	0	1	2	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0020	11772	3	0	2	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0021	11772	3	3	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0022	11773	2	2	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0023	11775	2	0	0	2	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0024	11774	2	0	0	0	0	2	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0025	11774	2	0	0	1	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0026	11775	2	0	0	0	1	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0027	11774	2	2	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0028	11773	2	0	0	2	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0029	11775	2	0	0	1	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0030	11773	2	0	0	2	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0031	11768	2	2	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0032	11773	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0033	11768	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0034	11769	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0035	11773	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0036	11770	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0037	11770	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0038	11769	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0039	11770	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0040	11770	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0041	11769	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0042	11767	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0043	11773	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0044	11771	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0045	11776	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0046	11776	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0047	11776	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0048	11775	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0049	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258