JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD3_chr8_28489212_28579258	0/0	t0050	11775	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0051	11775	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0052	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0053	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0054	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0055	11775	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0056	11775	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0057	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0058	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0059	11775	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0060	11775	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0061	11775	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0062	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0063	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0064	11775	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0065	11774	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0066	11773	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0067	11774	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0068	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0069	11773	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0070	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0071	11773	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0072	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0073	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0074	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0075	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0076	11775	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0077	11769	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0078	11771	1	0	0	0	0	1	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0079	11771	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0080	11771	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0081	11774	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0082	11768	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0083	11773	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0084	11772	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0085	11777	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0086	11776	1	0	1	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0087	11761	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0088	11775	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0089	11772	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0090	11765	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0091	11774	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0092	11775	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0093	11768	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0094	11768	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	t0095	11767	1	1	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD4_chr11_86940679_86960395	0/0	t0001	5766	111	28	17	58	2	6	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0002	5774	97	10	10	62	1	14	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0003	5770	56	7	2	42	0	5	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/1	t0004	5770	52	2	15	22	4	8	copy fasta	FZD4	chr11	86940679	86960395