JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD4_chr11_86940679_86960395	0/0	t0005	5770	13	0	2	8	1	2	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	1/0	t0006	5774	12	0	11	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0007	5758	12	0	7	3	2	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0008	5770	12	1	1	6	1	3	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0009	5771	9	8	1	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0010	5774	8	3	5	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0011	5770	8	5	1	2	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0012	5766	6	0	0	6	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0013	5775	5	5	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0014	5769	4	0	0	4	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0015	5766	4	0	3	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0016	5778	3	2	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0017	5770	3	0	0	3	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0018	5766	2	2	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0019	5764	2	2	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0020	5766	2	0	0	2	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0021	5771	2	0	1	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0022	5775	2	2	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0023	5770	2	2	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0024	5766	2	0	0	0	0	2	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0025	5774	2	0	0	2	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0026	5774	2	0	0	2	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0027	5767	2	2	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0028	5774	2	0	0	1	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0029	5774	1	0	0	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0030	5770	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0031	5774	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0032	5774	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0033	5770	1	0	0	0	1	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0034	5770	1	0	1	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0035	5770	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0036	5766	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0037	5770	1	0	0	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0038	5770	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0039	5763	1	0	0	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0040	5763	1	0	1	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0041	5758	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0042	5770	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0043	5774	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0044	5770	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0045	5774	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0046	5767	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	t0047	5764	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD5_chr2_207757598_207774906	0/0	t0001	5280	81	1	23	52	1	4	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0002	5280	81	4	17	42	7	11	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0003	5280	60	0	1	51	0	8	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0004	5281	37	20	2	11	1	3	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0005	5280	17	6	6	0	2	3	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0006	5279	11	1	2	4	3	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0007	5282	8	8	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906