JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FZD5_chr2_207757598_207774906	0/0	t0008	5280	8	0	0	8	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0009	5280	7	7	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0010	5280	7	7	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0011	5282	7	0	1	6	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0012	5279	7	0	0	5	0	2	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/1	t0013	5280	5	0	4	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0014	5282	4	0	1	0	0	3	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0015	5281	4	0	2	2	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0016	5282	3	0	0	0	0	3	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0017	5279	3	0	1	1	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0018	5279	3	1	2	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	1/0	t0019	5282	3	1	0	0	1	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0020	5281	3	0	0	0	0	3	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0021	5280	2	0	2	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0022	5282	2	0	1	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0023	5282	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0024	5282	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0025	5280	2	0	0	2	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0026	5281	2	0	1	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0027	5280	2	0	0	1	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0028	5278	2	0	2	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0029	5280	2	0	1	0	1	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0030	5282	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0031	5280	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0032	5280	2	0	1	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0033	5280	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0034	5282	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0035	5279	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0036	5282	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0037	5281	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0038	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0039	5280	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0040	5269	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0041	5279	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0042	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0043	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0044	5280	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0045	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0046	5278	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0047	5278	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0048	5282	1	0	0	0	1	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0049	5280	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0050	5281	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0051	5279	1	0	0	0	1	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0052	5280	1	0	0	1	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0053	5280	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0054	5281	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0055	5280	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0056	5282	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	t0057	5280	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906